STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDPeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
oppC
Oligopeptide ABC transporter permease.
 
 0.999
oppB
Oligopeptide transporter permease.
 0.995
oppA-2
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein.
 
 
 0.988
oppA
ABC-type oligopeptide transporter periplasmic binding protein.
 
 
 0.981
ALP42452.1
Periplasmic murein peptide-binding protein.
 
 
 0.981
mppA
Murein tripeptide ABC transporter periplasmic substrate-binding protein.
 
 
 0.980
oppF
Oligopeptide ABC transporter ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
  
 
0.979
ALP43290.1
Peptide ABC transporter permease.
  
 0.977
ALP42078.1
Dipeptide transport system permease DppC.
  
 0.952
sapC
Peptide ABC transporter permease SapC.
     0.937
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.