STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41854.1CBS domain-containing protein. (130 aa)    
Predicted Functional Partners:
rfbB
dTDP-glucose 4, 6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.672
nifJ
Ferredoxin oxidoreductase.
   
   0.670
ALP40848.1
Hypothetical protein.
    
   0.554
ALP42544.1
LuxR family transcriptional regulator.
       0.549
ALP41553.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
   
  
 0.517
arnB
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase.
   
  
 0.517
ALP40965.1
Gfo/Idh/MocA family oxidoreductase.
   
  
 0.491
ydgJ
Oxidoreductase, NAD-binding protein.
   
  
 0.491
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.464
hrpA
ATP-dependent RNA helicase HrpA.
       0.438
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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