Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALP41994.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
rdxA
Cytochrome c oxidase accessory protein CcoG.
   
    0.809
ALP41574.1
Polyphosphate kinase 2.
  
    0.779
ALP40384.1
Polyphosphate kinase 2.
  
    0.779
hemN
Coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.617
ALP40179.1
Cytochrome c oxidase, cbb3-type, CcoQ subunit.
   
    0.597
qseB
Two-component system response regulator.
       0.568
ALP41281.1
Sensor histidine kinase.
       0.568
ompW
Membrane protein.
   
    0.564
ALP41620.1
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
    0.554
fixN
Cbb3-type cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
   
    0.548
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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