Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WL1483_27Hypothetical protein. (161 aa)    
Predicted Functional Partners:
ydiJ
D-lactate dehydrogenase.
       0.787
ALP41397.1
Hypothetical protein.
  
     0.738
ALP41423.1
Hypothetical protein.
  
     0.734
ALP40891.1
Collagenase family protein.
  
    0.711
ALP42544.1
LuxR family transcriptional regulator.
  
     0.690
WL1483_36
Membrane protein.
  
     0.684
ALP43142.1
Esterase YdiI.
       0.678
ALP41207.1
Hypothetical protein.
  
     0.670
ALP40009.1
Hypothetical protein.
  
     0.666
ALP42668.1
Hypothetical protein.
  
     0.658
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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