STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnBUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase. (318 aa)    
Predicted Functional Partners:
arnA
Bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase.
 
 
 0.997
arnC
UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.959
arnD
4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase.
 
  
 0.932
pseB
Lipopolysaccharide O-Ag biosynthesis protein FlmA.
 
  
 0.924
arnT
UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
 
  
 0.913
arnE
4-amino-4-deoxy-L-arabinose-phospho-UDP flippase.
 
  
 0.912
arnF
4-amino-4-deoxy-L-arabinose-phospho-UDP flippase.
 
  
 0.895
capD
Protein WbgZ.
 
  
 0.878
rfbB
dTDP-glucose 4, 6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.806
pseI
Pseudaminic acid synthase, NeuB.
 
  
 0.730
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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