STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjPYgjP protein. (164 aa)    
Predicted Functional Partners:
ALP42279.1
Hypothetical protein.
  
    0.791
ALP41397.1
Hypothetical protein.
       0.661
rlmF
23S rRNA mA1618 methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.589
ALP40972.1
Hypothetical protein.
 
    0.521
ALP40225.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
  
    0.483
ALP41815.1
Hypothetical protein.
 
     0.429
ALP43497.1
Hypothetical protein.
 
     0.427
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.417
yaeQ
YaeQ.
 
    0.410
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.