Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
WL1483_28Oligopeptide transport system permease OppB. (341 aa)    
Predicted Functional Partners:
yejE
ABC-type oligopeptide transport system, permease protein.
 
   
 0.954
ALP39625.1
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.941
gsiA
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
 
 0.939
ALP43290.1
Peptide ABC transporter permease.
 
 0.938
appF
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 
 0.936
ALP42078.1
Dipeptide transport system permease DppC.
 
 0.935
ALP42631.1
Peptide ABC transporter permease.
 
 
 0.935
ALP42045.1
Oligopeptide-binding protein OppA.
 
 
 0.931
oppC
Oligopeptide ABC transporter permease.
 
 0.931
oppD
Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.889
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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