Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP42340.1Hypothetical protein. (895 aa)    
Predicted Functional Partners:
WL1483_76
Hypothetical protein.
 
 
 
 0.949
ALP43043.1
Hypothetical protein.
     0.941
ALP43705.1
Chitinase.
 
 
 
 0.855
ALP42554.1
Chitinase.
 
 
 
 0.847
ALP40682.1
Chitinase.
 
 
 
 0.834
gbpA
N-acetylglucosamine-binding protein A.
 
   
 0.806
ALP40203.1
Chitobiase.
  
     0.669
chb
Chitobiase.
 
   
 0.662
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.661
ALP42950.1
Hypothetical protein.
  
   
 0.637
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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