STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygeYPeptidase. (397 aa)    
Predicted Functional Partners:
ygeX
Diaminopropionate ammonia-lyase.
  
 0.904
hyuA
Phenylhydantoinase.
 
  
 0.889
ygeW
Aspartate/ornithine carbamoyltransferase family protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.875
ygfK
Selenate reductase subunit YgfK.
 
 
 0.875
ssnA
Chlorohydrolase/aminohydrolase.
 
  
 0.789
xdhD
Hypoxanthine oxidase.
 
  
 0.779
yqeB
Xanthine dehydrogenase accessory factor subfamily protein.
 
     0.771
xdhB
Xanthine dehydrogenase subunit XdhB.
 
  
 0.767
xdhA
Xanthine dehydrogenase subunit XdhA.
 
  
 0.762
yqeA
Amino acid kinase; Belongs to the carbamate kinase family.
 
   
 0.754
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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