STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspFPsp operon transcriptional activator PspF. (335 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.781
ALP40159.1
Phage shock protein C.
 
     0.736
sapB
Peptide ABC transporter permease.
       0.729
sapC
Peptide ABC transporter permease SapC.
       0.729
sapD
Peptide ABC transporter ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
       0.729
sapF
Peptide ABC transporter ATP-binding protein SapF.
       0.729
sapA
Peptide ABC transporter substrate-binding protein.
       0.713
pspA-2
Phage shock protein A.
 
 
   0.706
pspB
Phage-shock protein.
 
     0.676
WL1483_21
Hypothetical protein.
       0.558
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.