STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP42493.1DNA gyrase inhibitor. (286 aa)    
Predicted Functional Partners:
yhhY
Acetyltransferase.
       0.793
ALP39998.1
AraC family transcriptional regulator.
 
 
 0.792
ALP39921.1
AraC/XylS family transcriptional regulator.
 
     0.685
ALP43225.1
Short-chain alcohol dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.579
ALP41340.1
AraC family transcriptional regulator.
 
     0.545
virF
AraC family transcriptional regulator.
 
     0.543
ALP41152.1
AraC family transcriptional regulator.
 
     0.532
ALP40233.1
Hypothetical protein.
 
     0.526
ALP43703.1
Transporter.
       0.523
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.501
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.