STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscSPreprotein translocase S. (88 aa)    
Predicted Functional Partners:
yscR
Type III secretion system protein SsaR.
 
 
 0.998
yscT
Yop proteins translocation protein T.
 
 
 0.997
yscR-2
Flagellar biosynthesis protein FliP.
 
 
 0.990
ssaT
Type III secretion protein.
 
 
 0.988
yscQ
Type III secretion inner membrane protein (YscQ, homologous to flagellar export components).
 
  
 0.987
yscU
Preprotein translocase U.
 
  
 0.983
yscJ
Preproteins translocase J.
 
 
 0.981
ALP42169.1
Hypothetical protein.
 
 
 0.981
lcrD
AscV protein.
 
 
 0.978
ssaV
Secretion system apparatus protein SsaV.
 
 
 0.968
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.