STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP42770.1LysM domain-containing protein. (363 aa)    
Predicted Functional Partners:
ALP39878.1
Type IV pilus secretin PilQ.
 
 
 
 0.954
ALP40827.1
Type IV pilus biogenesis protein PilO.
 
 
   0.927
ALP40895.1
Type IV pilus biogenesis PilN.
  
 
   0.927
ALP41442.1
Type IV pilus biogenesis protein TapP.
 
 
   0.927
ALP42325.1
Pilus assembly protein PilM.
  
 
   0.925
ALP43732.1
Hypothetical protein.
  
 
   0.862
ALP40665.1
Phage baseplate protein.
  
 
 0.859
ALP41019.1
Hypothetical protein.
  
 
 0.859
ALP41239.1
Phage protein.
  
 
 0.859
smg
Protein smg; Belongs to the Smg family.
 
     0.829
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.