STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuCAnaerobic C4-dicarboxylate transporter. (450 aa)    
Predicted Functional Partners:
ycdZ
Chloride channel protein EriC.
  
     0.751
ALP43573.1
valyl-tRNA synthetase; Belongs to the UPF0267 family.
  
     0.714
cadB
Lysine/cadaverine antiporter.
  
     0.665
ALP41711.1
Hypothetical protein.
  
     0.627
yjiH
Membrane protein.
  
     0.586
yjiG
Arginine/ornithine antiporter ArcD.
  
     0.577
ALP43234.1
dsDNA-mimic protein.
  
     0.559
ALP42853.1
Hypothetical protein.
  
     0.555
dcuB
Anaerobic C4-dicarboxylate transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
   
 0.540
ALP43150.1
Hypothetical protein.
  
     0.538
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.