STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39762.1TPR-repeat-containing protein. (414 aa)    
Predicted Functional Partners:
ALP40712.1
Periplasmic protein TonB2.
 
 
   0.955
exbD2
TonB system transport protein ExbD2.
 
 
   0.936
WL1483_6
TonB system biopolymer transport component.
 
 
 0.919
ALP43540.1
TolQ proton channel protein.
 
     0.910
ALP43222.1
Biopolymer transporter ExbB.
 
     0.905
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.857
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.857
ALP43289.1
Ankyrin.
  
 0.829
ALP41788.1
Vegetatible incompatibility protein HET-E-1.
  
 
 0.774
ALP43281.1
Hypothetical protein.
    
 0.760
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.