STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcDNUDIX hydrolase YfcD. (167 aa)    
Predicted Functional Partners:
ALP39698.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
       0.773
ubiF
2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinol hydroxylase.
   
  
 0.627
ubiH
2-polyprenyl-6-methoxyphenol 4-hydroxylase.
   
  
 0.627
ubiI
2-octaprenyl-6-methoxyphenol hydroxylase.
   
  
 0.627
agmO
Sterol desaturase.
  
  
 0.611
WL1483_94
Fatty acid hydroxylase.
  
  
 0.611
caxA-2
K+-dependent Na+/Ca+ exchanger-like protein.
       0.542
ALP39840.1
Hypothetical protein.
       0.517
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
  
 0.440
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 
 0.424
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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