STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vdcADiguanylate cyclase. (340 aa)    
Predicted Functional Partners:
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
 
 0.847
ALP40189.1
Cyclic diguanylate phosphodiesterase domain-containing protein.
    0.829
yahA
Diguanylate phosphodiesterase.
  
 0.827
ALP40015.1
Regulatory protein CsrD.
 
  
 0.803
ALP41090.1
Diguanylate phosphodiesterase.
 
    0.801
ALP41709.1
Hypothetical protein.
  
     0.760
ALP42953.1
Hypothetical protein.
 
 
 0.752
ALP41690.1
Hypothetical protein.
  
     0.714
barA
Hybrid sensory histidine kinase BarA.
 
 0.699
rpfG
Chemotaxis protein CheY.
 
    0.692
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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