STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdSRestriction modification system DNA specificity domain. (594 aa)    
Predicted Functional Partners:
hsdM
Restriction endonuclease EcoEI subunit M.
 
 
 0.997
hsdR
Restriction endonuclease subunit R.
 
 
 0.983
ALP40617.1
Site-specific DNA-methyltransferase (adenine-specific).
  
 
 0.958
ALP41163.1
Type I restriction-modification system subunit M.
  
 
 0.958
ALP40993.1
HsdR family type I site-specific deoxyribonuclease.
  
  
 0.899
ALP39527.1
ATP-dependent exoDNAse.
  
  
 0.761
ybjD
RedF-like protein.
  
  
 0.761
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.736
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.680
ALP39586.1
ATPase.
  
  
 0.610
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.