Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALP39778.1Diguanylate cyclase. (542 aa)    
Predicted Functional Partners:
ALP41090.1
Diguanylate phosphodiesterase.
 
     0.776
ALP41567.1
Sensory box/GGDEF family protein.
       0.773
yahA
Diguanylate phosphodiesterase.
  
     0.773
ALP40189.1
Cyclic diguanylate phosphodiesterase domain-containing protein.
  
     0.773
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
  
     0.772
ALP41709.1
Hypothetical protein.
  
     0.769
ALP40015.1
Regulatory protein CsrD.
  
     0.751
ALP41690.1
Hypothetical protein.
  
     0.743
ALP40852.1
Response regulator/sensory box/hdig domain-containing protein.
  
     0.672
rpfG
Chemotaxis protein CheY.
  
     0.659
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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