Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yscR-2Flagellar biosynthesis protein FliP. (215 aa)    
Predicted Functional Partners:
ssaT
Type III secretion protein.
 
 
 0.991
yscS
Preprotein translocase S.
 
 
 0.990
yscT
Yop proteins translocation protein T.
 
 
 0.985
ALP42169.1
Hypothetical protein.
 
 
 0.973
yscJ
Preproteins translocase J.
 
 
 0.969
ssaU
Secretion system apparatus protein SsaU.
 
  
 0.960
ssaV
Secretion system apparatus protein SsaV.
 
 
 0.958
lcrD
AscV protein.
 
 
 0.951
yscU
Preprotein translocase U.
 
  
 0.934
yscR
Type III secretion system protein SsaR.
  
  
 
0.903
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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