STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP43014.1Phosphatidylserine decarboxylase; Belongs to the phosphatidylserine decarboxylase family. (456 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase.
  
  
  0.934
pssA
Phosphatidylserine synthase.
   
 0.922
eprA1
Extracellular protease.
  
     0.526
pip
Proline iminopeptidase.
  
 
   0.474
ALP41776.1
Leucine aminopeptidase.
  
     0.459
ALP40667.1
Histidine kinase.
  
     0.444
ALP42447.1
Chemotaxis protein CheY.
 
   
 0.432
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
     0.425
ALP40814.1
Hypothetical protein.
  
     0.417
ALP42102.1
Hypothetical protein.
 
     0.417
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.