STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39780.1Caax amino protease family protein. (276 aa)    
Predicted Functional Partners:
ALP41477.1
Hypothetical protein.
  
  
 0.849
ALP39562.1
Hypothetical protein.
       0.596
ydjA
Nitroreductase family protein.
  
  
 0.591
nfsA
Nitroreductase A; Belongs to the flavin oxidoreductase frp family.
  
  
 0.591
ALP39819.1
Hypothetical protein.
 
     0.564
yadH
Inner membrane transport permease.
  
  
 0.537
ALP41160.1
ABC transporter.
  
  
 0.537
ALP41862.1
Multidrug ABC transporter permease.
  
  
 0.537
ALP42356.1
Multidrug ABC transporter permease.
  
  
 0.537
ALP41354.1
Hypothetical protein.
       0.491
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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