STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP43037.1HD-GYP domain-containing protein. (414 aa)    
Predicted Functional Partners:
ALP41959.1
Competence/damage-inducible protein CinA; Belongs to the CinA family.
       0.778
ALP40816.1
Diguanylate cyclase.
 
 
 
 0.599
ALP40824.1
PAS/GGDEF domain-containing protein.
 
   
 0.582
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
 
 
 0.570
vdcA
Diguanylate cyclase.
 
 
   0.562
ALP40178.1
Hypothetical protein.
  
 
   0.548
ALP39855.1
GGDEF domain-containing protein.
 
   
 0.542
metA
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.536
ALP40471.1
Hypothetical protein.
  
 
   0.528
ALP39807.1
Diguanylate phosphodiesterase.
 
   
 0.524
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.