STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39807.1Diguanylate phosphodiesterase. (828 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein ArcB.
 
 0.924
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
 
 
0.921
ALP42115.1
Hypothetical protein.
 
 0.920
barA
Hybrid sensory histidine kinase BarA.
 
 0.879
ALP42102.1
Hypothetical protein.
 
 0.868
ALP42447.1
Chemotaxis protein CheY.
 
 
 0.861
ALP41039.1
Tmao reductase sytem sensor tors.
 
 0.854
ALP41709.1
Hypothetical protein.
 
 
 0.843
ALP41690.1
Hypothetical protein.
 
 
 0.805
ALP40015.1
Regulatory protein CsrD.
 
 
0.805
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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