STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP43324.1Coproporphyrinogen III oxidase. (407 aa)    
Predicted Functional Partners:
ompW
Membrane protein.
  
  
 0.804
ALP40506.1
Heme iron utilization protein.
  
 0.801
fixN
Cbb3-type cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.612
rdxA
Cytochrome c oxidase accessory protein CcoG.
  
  
 0.582
ALP39584.1
Cbb3-type cytochrome c oxidase subunit II.
  
  
 0.557
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.538
ybjT
Nucleoside-diphosphate-sugar epimerase.
  
  
 0.529
nifJ
Ferredoxin oxidoreductase.
 
   
 0.522
ALP40816.1
Diguanylate cyclase.
  
  
 0.509
ALP41574.1
Polyphosphate kinase 2.
  
    0.505
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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