STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP43385.1ExsD protein. (265 aa)    
Predicted Functional Partners:
yscI
Preprotein translocase I.
  
    0.864
yscF
Type III secretion apparatus needle protein YscF.
  
    0.800
yscD
Type III secretion apparatus protein, YscD/HrpQ family.
  
    0.786
yscG
Type 3 secretion protein AscG.
  
  
 0.784
yscJ
Preproteins translocase J.
  
    0.779
exsC
Glycosyl transferase.
   
 
 0.766
yscB
Type III secretion protein.
       0.737
yscK
Type III secretion cytoplasmic protein (YscK).
  
    0.688
lcrH
Low calcium response locus protein H.
   
    0.687
ALP42888.1
Hypothetical protein.
   
  
 0.684
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.