STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP43517.1Pilin. (196 aa)    
Predicted Functional Partners:
ALP43713.1
Msha biogenesis protein mshl.
 
  
 0.805
ALP42351.1
Msha biogenesis protein mshj.
 
   
 0.798
ALP40560.1
MSHA biogenesis protein MshO.
 
     0.791
ALP43675.1
MSHA biogenesis protein MshN/MshD.
 
     0.790
ALP39851.1
MSHA biogenesis protein MshI.
 
   
 0.780
ALP39612.1
MshQ protein.
 
     0.768
ALP42396.1
MSHA biogenesis protein MshP.
 
   
 0.746
ALP43146.1
Diguanylate cyclase.
  
     0.683
exeJ
General secretion pathway protein J.
 
 
 0.680
ALP43262.1
GspF family protein.
 
  
 0.671
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.