Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALP39835.1Lipase. (176 aa)    
Predicted Functional Partners:
lipA
Lipase.
  
  0.999
ALP42564.1
Acyltransferase.
  
  
  0.921
ALP40837.1
Lipase chaperone.
  
 
 0.901
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
     
 0.900
ALP42581.1
Long-chain acyl-CoA synthetase.
  
  
 0.839
ALP43081.1
Long-chain-fatty-acid--CoA ligase.
     
 0.806
fadD
Long-chain fatty acid--CoA ligase.
     
  0.800
sanA
SanA protein.
       0.541
ALP40891.1
Collagenase family protein.
 
     0.539
ALP41883.1
Hypothetical protein.
  
     0.503
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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