Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ALP39841.1Histidine kinase. (604 aa)    
Predicted Functional Partners:
ALP40475.1
CheY-like receiver.
 
   
 0.948
arcB
Aerobic respiration control sensor protein ArcB.
 
 
0.912
ALP41039.1
Tmao reductase sytem sensor tors.
 
 
 0.877
ALP42102.1
Hypothetical protein.
 
 
 0.862
ALP42447.1
Chemotaxis protein CheY.
  
 
 0.827
barA
Hybrid sensory histidine kinase BarA.
 
 
0.821
fhlA
ATPase AAA.
   
 
 0.802
ALP40113.1
Hypothetical protein.
 
 
 0.799
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.774
ALP43038.1
Hypothetical protein.
 
 
 
 0.759
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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