STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompR-2Winged helix family two component transcriptional regulator. (241 aa)    
Predicted Functional Partners:
ALP41387.1
Signal transduction histidine kinase.
 
 
 0.946
arcB
Aerobic respiration control sensor protein ArcB.
 
 0.929
ALP42115.1
Hypothetical protein.
 
 
0.897
barA
Hybrid sensory histidine kinase BarA.
 
0.896
ALP41039.1
Tmao reductase sytem sensor tors.
 
 
 0.894
rstB
Sensor protein RstB.
 
 0.873
ALP41841.1
Sensor histidine kinase.
 
 
 0.869
ALP42102.1
Hypothetical protein.
 
0.865
ALP42991.1
Sensor histidine kinase CpxA.
 
 
 0.847
ALP41301.1
Osmolarity sensor protein.
 
 
 0.825
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.