STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39846.1Polymerase. (403 aa)    
Predicted Functional Partners:
ALP43480.1
ADP-heptose--LPS heptosyltransferase.
 
 
 0.942
rfaF
ADP-heptose-LPS heptosyltransferase II.
  
 
 0.936
ALP41615.1
Polysaccharide deacetylase.
 
  
 0.932
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.920
ALP40296.1
LPS biosynthesis protein.
 
   
 0.823
ALP41397.1
Hypothetical protein.
 
     0.766
ALP41423.1
Hypothetical protein.
  
     0.763
ALP41499.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.759
ALP40009.1
Hypothetical protein.
  
     0.745
ALP41207.1
Hypothetical protein.
  
     0.742
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
Server load: medium (52%) [HD]