STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscHYop proteins translocation protein H. (156 aa)    
Predicted Functional Partners:
yscF
Type III secretion apparatus needle protein YscF.
    
  0.849
yscC
Type III secretion outer membrane pore, YscC/HrcC family.
    
  0.809
yscI
Preprotein translocase I.
       0.773
yscJ
Preproteins translocase J.
       0.773
yscK
Type III secretion cytoplasmic protein (YscK).
       0.773
ALP42399.1
Hypothetical protein.
       0.773
yscG
Type 3 secretion protein AscG.
       0.773
yscL
Type III secretion apparatus protein, HrpE/YscL family.
       0.773
yscD
Type III secretion apparatus protein, YscD/HrpQ family.
       0.714
yscB
Type III secretion protein.
       0.598
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.