STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39878.1Type IV pilus secretin PilQ. (672 aa)    
Predicted Functional Partners:
ALP41442.1
Type IV pilus biogenesis protein TapP.
 
 
 0.995
ALP40895.1
Type IV pilus biogenesis PilN.
 
 
 0.991
ALP42325.1
Pilus assembly protein PilM.
 
 
 0.986
ALP40827.1
Type IV pilus biogenesis protein PilO.
 
 
 0.981
ALP42770.1
LysM domain-containing protein.
 
 
 
 0.954
ALP40790.1
Hypothetical protein.
  
 
 0.890
ALP42647.1
Hypothetical protein.
  
 
 0.890
ALP43732.1
Hypothetical protein.
 
 
 
 0.862
tapC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.841
ALP39851.1
MSHA biogenesis protein MshI.
  
 
 0.786
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.