Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALP39878.1Type IV pilus secretin PilQ. (672 aa)    
Predicted Functional Partners:
ALP40895.1
Type IV pilus biogenesis PilN.
 
 
 0.993
ALP41442.1
Type IV pilus biogenesis protein TapP.
 
 
 0.993
ALP42325.1
Pilus assembly protein PilM.
 
 
 0.990
ALP40827.1
Type IV pilus biogenesis protein PilO.
 
 
 0.985
ALP42770.1
LysM domain-containing protein.
 
 
 
 0.967
ALP40790.1
Hypothetical protein.
  
 
 0.859
ALP42647.1
Hypothetical protein.
  
 
 0.859
ALP43732.1
Hypothetical protein.
 
 
 
 0.858
tapC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.809
ALP39851.1
MSHA biogenesis protein MshI.
  
 
 0.798
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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