Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
yfmDIron ABC transporter. (319 aa)    
Predicted Functional Partners:
fecE
Iron ABC transporter.
 
 0.996
fecB
Iron-dicitrate transporter substrate-binding subunit.
 
 
 0.980
fhuC
Iron ABC transporter ATP-binding protein.
 
 
 0.970
hmuV
Hemin ABC transporter ATP-binding protein HutD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.968
yfmE
Iron-dicitrate transporter subunit FecD.
 
  
 
0.961
ALP41170.1
Hemin receptor.
 
 
 0.918
btuD
Vitamin B12 import ATP-binding protein BtuD.
 
 
 0.912
ALP41551.1
ABC transporter substrate-binding protein.
 
 
 0.892
ALP42763.1
ABC transporter substrate-binding protein.
 
 
 0.818
ALP42788.1
Ligand-gated channel.
 
  
 0.628
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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