Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALP39885.1 | ALP40495.1 | WL1483_466 | WL1483_4513 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.678 |
| ALP39885.1 | ALP41078.1 | WL1483_466 | WL1483_1659 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | Hypothetical protein. | 0.573 |
| ALP39885.1 | ALP43146.1 | WL1483_466 | WL1483_3727 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | Diguanylate cyclase. | 0.561 |
| ALP39885.1 | ALP43675.1 | WL1483_466 | WL1483_4256 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | MSHA biogenesis protein MshN/MshD. | 0.549 |
| ALP39885.1 | ALP43686.1 | WL1483_466 | WL1483_4267 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | Hypothetical protein. | 0.679 |
| ALP39885.1 | ptsH | WL1483_466 | WL1483_4135 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | PTS sugar transporter. | 0.802 |
| ALP39885.1 | rpoC | WL1483_466 | WL1483_2065 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.519 |
| ALP39885.1 | rpoD | WL1483_466 | WL1483_1958 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.945 |
| ALP39885.1 | rpoH | WL1483_466 | WL1483_1324 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.816 |
| ALP39885.1 | rpoS | WL1483_466 | WL1483_1153 | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.854 |
| ALP40495.1 | ALP39885.1 | WL1483_4513 | WL1483_466 | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | 0.678 |
| ALP40495.1 | ALP41078.1 | WL1483_4513 | WL1483_1659 | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | Hypothetical protein. | 0.427 |
| ALP40495.1 | ALP43146.1 | WL1483_4513 | WL1483_3727 | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | Diguanylate cyclase. | 0.503 |
| ALP40495.1 | ALP43675.1 | WL1483_4513 | WL1483_4256 | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | MSHA biogenesis protein MshN/MshD. | 0.611 |
| ALP41078.1 | ALP39885.1 | WL1483_1659 | WL1483_466 | Hypothetical protein. | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | 0.573 |
| ALP41078.1 | ALP40495.1 | WL1483_1659 | WL1483_4513 | Hypothetical protein. | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.427 |
| ALP41078.1 | ALP43675.1 | WL1483_1659 | WL1483_4256 | Hypothetical protein. | MSHA biogenesis protein MshN/MshD. | 0.405 |
| ALP43146.1 | ALP39885.1 | WL1483_3727 | WL1483_466 | Diguanylate cyclase. | anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. | 0.561 |
| ALP43146.1 | ALP40495.1 | WL1483_3727 | WL1483_4513 | Diguanylate cyclase. | Type IV pilus assembly protein PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.503 |
| ALP43146.1 | ALP43675.1 | WL1483_3727 | WL1483_4256 | Diguanylate cyclase. | MSHA biogenesis protein MshN/MshD. | 0.718 |
page 1 of 2