STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP42386.1Fermentation/respiration switch protein; Belongs to the UPF0255 family. (422 aa)    
Predicted Functional Partners:
crl
DNA-binding transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.881
crr
PTS system glucose-specific transporter subunit IIA.
    
 
 0.797
ALP41424.1
Outer membrane protein.
  
    0.750
ALP42196.1
Hypothetical protein.
  
     0.744
ALP42333.1
Hypothetical protein.
  
     0.734
ALP43425.1
Hypothetical protein.
  
     0.734
ALP40068.1
Outer membrane protein C.
  
    0.727
ALP43057.1
Hypothetical protein; Belongs to the UPF0253 family.
  
     0.720
ALP43682.1
Hypothetical protein.
  
     0.714
ALP40180.1
Outer membrane porin.
  
    0.702
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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