Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALP39919.1Motility protein FimV. (625 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.831
ALP41397.1
Hypothetical protein.
 
  
 0.711
ALP41423.1
Hypothetical protein.
  
     0.699
ALP40827.1
Type IV pilus biogenesis protein PilO.
  
  
 0.694
ALP42668.1
Hypothetical protein.
  
     0.678
ALP43684.1
Hypothetical protein.
  
     0.666
ALP40895.1
Type IV pilus biogenesis PilN.
  
  
 0.647
ALP42019.1
Hypothetical protein.
  
   
 0.641
ALP40427.1
Hypothetical protein; Belongs to the UPF0319 family.
  
     0.621
ALP41610.1
Phospholipase A1.
  
     0.616
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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