Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ALP43573.1valyl-tRNA synthetase; Belongs to the UPF0267 family. (103 aa)    
Predicted Functional Partners:
ALP41650.1
cAMP-binding protein.
       0.776
ycdZ
Chloride channel protein EriC.
  
     0.765
ALP43234.1
dsDNA-mimic protein.
  
     0.715
nrfB
Formate-dependent nitrite reductase, penta-heme cytochrome c.
  
     0.714
dcuC
Anaerobic C4-dicarboxylate transporter.
  
     0.714
ALP43057.1
Hypothetical protein; Belongs to the UPF0253 family.
  
     0.674
nrfD
Protein NrfD.
  
     0.670
pnuC
Nicotinamide riboside transporter PnuC.
 
     0.658
ALP41737.1
Hypothetical protein.
  
     0.656
ALP42108.1
Hypothetical protein.
  
     0.656
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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