STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39925.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
phrB
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
  
  
 0.976
bluR
MerR family transcriptional regulator.
  
  
 0.901
ALP40405.1
Transcriptional regulator.
 
  
 0.852
ALP41443.1
Short chain dehydrogenase/reductase family oxidoreductase.
       0.802
ALP39834.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.754
thiI
tRNA s(4)U8 sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
     0.655
ALP43255.1
Hypothetical protein.
  
     0.648
ALP40502.1
Plasmid partition ParA protein.
       0.599
ALP42415.1
FAD-dependent oxidoreductase.
       0.599
ALP43742.1
Hypothetical protein.
       0.599
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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