Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP39938.1Type I pilus assembly protein FimF. (166 aa)    
Predicted Functional Partners:
papD
Molecular chaperone.
 
 
 0.996
pmfC
Fimbrial assembly protein.
 
 
 0.984
ALP42364.1
Hypothetical protein.
  
 
 0.813
ALP41583.1
Fimbrial protein.
     
 0.747
ALP43501.1
Porin.
  
     0.741
ALP40180.1
Outer membrane porin.
  
  
 0.722
ALP41423.1
Hypothetical protein.
  
     0.709
ALP40068.1
Outer membrane protein C.
  
  
 0.708
ALP41499.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.673
ALP43638.1
Hypothetical protein.
  
     0.669
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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