Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP39947.1Transposase IS4 family protein. (196 aa)    
Predicted Functional Partners:
ALP41808.1
Putative IS4 transposase.
      0.823
ALP40464.1
Transposase.
       0.773
insF
Transposase.
       0.697
ALP40097.1
DNA replication protein.
 
     0.618
ALP40427.1
Hypothetical protein; Belongs to the UPF0319 family.
  
     0.586
ALP42096.1
Hypothetical protein.
  
     0.581
bamC
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.501
sprT
SprT protein; Belongs to the SprT family.
  
     0.490
ALP42149.1
Flagellar modification protein FlmH.
  
     0.475
ALP39569.1
Hypothetical protein.
  
     0.472
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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