Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALP39998.1AraC family transcriptional regulator. (295 aa)    
Predicted Functional Partners:
ALP42493.1
DNA gyrase inhibitor.
 
 
 0.777
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.731
ALP40233.1
Hypothetical protein.
 
 
 0.730
ALP41790.1
Membrane protein.
 
     0.719
ALP41211.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.562
yqhC
Putative HTH-type transcriptional regulator YqhC.
 
 
 0.556
ALP40713.1
DNA-binding protein.
 
 
 0.485
ybjD
RedF-like protein.
       0.430
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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