STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP39998.1AraC family transcriptional regulator. (295 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.793
ALP42493.1
DNA gyrase inhibitor.
 
 
 0.792
ALP40233.1
Hypothetical protein.
 
 
 0.738
ALP41790.1
Membrane protein.
 
   
 0.723
yqhC
Putative HTH-type transcriptional regulator YqhC.
 
 
 0.569
ALP40713.1
DNA-binding protein.
 
 
 0.567
ALP41211.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.563
yqhD
Aldehyde reductase.
  
    0.543
yqhD-2
Aldehyde reductase.
  
    0.543
WL1483_48
Hypothetical protein.
   
    0.509
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.