STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40006.1Ligand-gated channel protein. (654 aa)    
Predicted Functional Partners:
ALP40712.1
Periplasmic protein TonB2.
 
 
 0.919
ALP40337.1
Hypothetical protein.
  
 
 0.901
ALP41456.1
Hypothetical protein.
  
 
 
 0.846
ALP43662.1
Propeptide, PepSY amd peptidase.
  
  
 0.625
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.575
exbD2
TonB system transport protein ExbD2.
  
  
 0.575
ALP43253.1
Glycosidase.
     
 0.543
ALP41322.1
TonB-dependent receptor.
 
  
 0.534
ALP43405.1
HutZ protein.
  
  
 0.524
ALP41551.1
ABC transporter substrate-binding protein.
  
  
 0.507
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.