Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALP40006.1Ligand-gated channel protein. (654 aa)    
Predicted Functional Partners:
ALP40712.1
Periplasmic protein TonB2.
 
 
 0.905
ALP40337.1
Hypothetical protein.
  
 
 0.864
ALP41456.1
Hypothetical protein.
  
 
 
 0.799
ALP43662.1
Propeptide, PepSY amd peptidase.
  
  
 0.652
ALP43253.1
Glycosidase.
       0.531
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.520
exbD2
TonB system transport protein ExbD2.
  
  
 0.520
ALP41620.1
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
 
 
 0.503
ALP39946.1
Hypothetical protein.
 
    0.503
hmrR
Cu(I)-responsive transcriptional regulator.
      
 0.469
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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