Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP40015.1Regulatory protein CsrD. (640 aa)    
Predicted Functional Partners:
ALP42115.1
Hypothetical protein.
  
 
 0.945
barA
Hybrid sensory histidine kinase BarA.
 
  
 0.938
ALP42953.1
Hypothetical protein.
  
 
 0.938
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.938
ALP42102.1
Hypothetical protein.
 
  
 0.926
ALP41039.1
Tmao reductase sytem sensor tors.
  
  
 0.916
ALP40816.1
Diguanylate cyclase.
 
 
 0.902
ALP41064.1
Sensory box protein.
 
 
 0.882
ALP40397.1
Hypothetical protein.
 
 
 0.881
ALP40725.1
Sensory box protein.
 
 
 0.879
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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