STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40015.1Regulatory protein CsrD. (640 aa)    
Predicted Functional Partners:
ALP42115.1
Hypothetical protein.
  
 
 0.957
ALP42953.1
Hypothetical protein.
  
 
 0.946
barA
Hybrid sensory histidine kinase BarA.
 
  
 0.942
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.940
ALP40816.1
Diguanylate cyclase.
 
 
 0.906
ALP42102.1
Hypothetical protein.
 
  
 0.904
ALP41064.1
Sensory box protein.
 
 
 0.898
ALP40397.1
Hypothetical protein.
 
 
 0.896
ALP40725.1
Sensory box protein.
 
 
 0.894
ALP41039.1
Tmao reductase sytem sensor tors.
  
  
 0.891
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.