STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40035.1Arylsulfatase. (310 aa)    
Predicted Functional Partners:
ALP43493.1
Minor nuclease C1B isoform.
   
   0.879
ALP43586.1
AraC family transcriptional regulator.
 
     0.860
ALP39650.1
Hypothetical protein.
       0.800
ALP39702.1
Hypothetical protein.
       0.795
ALP40172.1
Hypothetical protein.
       0.795
ALP40126.1
Aldose 1-epimerase family protein; Belongs to the glucose-6-phosphate 1-epimerase family.
    
   0.668
tmcA
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
   
    0.522
ALP40523.1
Toxin-antitoxin system, toxin component.
       0.513
cydB
Cytochrome BD oxidase subunit II.
       0.481
cydA-2
Cytochrome d ubiquinol oxidase subunit I.
       0.481
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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