STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecBIron-dicitrate transporter substrate-binding subunit. (307 aa)    
Predicted Functional Partners:
yfmD
Iron ABC transporter.
 
 
 0.980
yfmE
Iron-dicitrate transporter subunit FecD.
 
 
 0.979
fecE
Iron ABC transporter.
 
 
 0.978
ALP42788.1
Ligand-gated channel.
  
  
 0.920
fhuC
Iron ABC transporter ATP-binding protein.
 
  
 0.772
ALP42828.1
Aconitase.
 
   
 0.744
ALP43287.1
Ligand-gated channel protein.
 
     0.710
fepD
ABC-type Fe3+-siderophore transporter permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.696
ALP42141.1
Siderophore synthetase component.
 
   
 0.694
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
   0.677
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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