STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40086.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
ALP39740.1
Hypothetical protein.
       0.793
ALP43597.1
Hypothetical protein.
  
     0.664
ALP43573.1
valyl-tRNA synthetase; Belongs to the UPF0267 family.
  
     0.608
ALP43234.1
dsDNA-mimic protein.
  
     0.607
yceB
Lipoprotein.
  
     0.588
ALP39938.1
Type I pilus assembly protein FimF.
  
     0.555
ALP43772.1
Hypothetical protein.
  
     0.536
ALP39670.1
Lipoprotein.
  
     0.517
ALP43440.1
DNA replication terminus site-binding protein.
  
     0.517
lpp
Outer membrane lipoprotein.
  
   
 0.506
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.