STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctDC4-dicarboxylate ABC transporter. (453 aa)    
Predicted Functional Partners:
WL1483_64
C4-dicarboxylate transporter signal transduction histidine kinase.
 0.992
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.783
glnL
Nitrogen regulation protein NR(II).
 
 0.684
ALP43667.1
CobQ/CobB/MinD/ParA family protein.
  
 
 0.674
dctP
C4-dicarboxylate ABC transporter.
    
 0.602
ALP40376.1
enoyl-CoA hydratase/isomerase.
       0.581
cheA
Chemotaxis protein CheA.
  
 
 0.547
ALP40164.1
Flagellar biosynthesis protein FlhF.
  
  
 0.532
fliS
LafC.
  
  
 0.521
flgG
Lateral flagellar basal-body rod protein LfgG; Belongs to the flagella basal body rod proteins family.
  
  
 0.516
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.