Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ompR-3Winged helix family two component transcriptional regulator. (240 aa)    
Predicted Functional Partners:
ALP41841.1
Sensor histidine kinase.
 
 
 0.963
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.917
ALP41039.1
Tmao reductase sytem sensor tors.
 
 
 0.868
barA
Hybrid sensory histidine kinase BarA.
  
 
 0.852
ALP42115.1
Hypothetical protein.
  
 
 0.849
ALP41301.1
Osmolarity sensor protein.
 
 
 0.830
ALP41387.1
Signal transduction histidine kinase.
 
 
 0.817
ALP42102.1
Hypothetical protein.
  
 
 0.813
ALP42991.1
Sensor histidine kinase CpxA.
 
 
 0.804
nuoC
NADH: ubiquinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
   0.780
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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