Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WL1483_72Hypothetical protein. (162 aa)    
Predicted Functional Partners:
ALP42169.1
Hypothetical protein.
 
  
 0.898
ALP42191.1
Type III secretion protein.
 
     0.861
spiA
Type II secretory pathway protein.
 
    0.850
yscJ
Preproteins translocase J.
 
  
 0.847
ALP43394.1
Hypothetical protein.
  
  
 0.837
yopN
Type III secretion protein.
 
    0.831
yscL
Type III secretion apparatus protein, HrpE/YscL family.
 
    0.780
lcrD
AscV protein.
 
  
 0.779
yscT
Yop proteins translocation protein T.
 
    0.775
yscC
Type III secretion outer membrane pore, YscC/HrcC family.
 
    0.772
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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